- 1. Haisheng Ou, Pengfei Zhang, Xiaochun Wang, Manman Lin, Yuanpeng Li, and Guiwen Wang, “Gaining insights into the responses of individual yeast cells to ethanol fermentation using Raman tweezers and chemometrics,” Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 319, 124584 (2024).
- 2. Xuan Zhao, Hang Yuan, Pengfei Zhang*, and Feng Gao, “Snapshot volumetric imaging using rainbow-sheet illumination,” APL Photonics, 9, 026101 (2024).
- 3. Yakun Wang, Hang Yuan, Xuan Zhao, Pengfei Zhang*, Guiwen Wang, and Feng Gao, “Compressive Raman imaging by combining scattering-projection interleaving with context-aware excitation”, Analytical Methods, 16, 583-588 (2024).
- 4. Qi Xia, Zhixuan Huang, Pengfei Zhang, Hanping Bu, Lei Bao, Da Chen, “Nontargeted detection and recognition of adulterants in milk powder using Raman imaging and neural networks,” Analyst, 148, 412-421 (2023).
- 5. Jongbeom Kim, Gyuwon Kim, Lei Li, Pengfei Zhang, Jin Young Kim, Yeonggeun Kim, Hyung Ham Kim, Lihong V Wang, Seungchul Lee, Chulhong Kim, “Deep learning acceleration of multiscale superresolution localization photoacoustic imaging,” Light: Science & Applications, 11 (1), 131 (2022).
- 6. Mengyu Jia, Lequan Yu, Wenxing Bai, Pengfei Zhang, Limin Zhang, Wei Wang, Feng Gao,“Single pixel imaging via unsupervised deep compressive sensing with collaborative sparsity in discretized feature space,”Journal of Biophotonics, 15 (7), e202200045 (2022).
- 7. Pengfei Zhang, Yuhan Miao, Yiwen Ma, Pengfei Niu, Liang Zhang, Limin Zhang, and Feng Gao, “All-optical ultrasonic detector based on differential interference,” Opt. Lett., 47, 4790-4793 (2022).
- 8. Hang Yuan, Pengfei Zhang*, Feng Gao, and Xianyu Bao, “Combination of scattering-projection interleaving and random down-sampling for compressive confocal Raman imaging,” Opt. Express, 30(25), 44657-44664 (2022).
- 9. Hang Yuan, Pengfei Zhang*, and Feng Gao, “Compressive hyperspectral Raman imaging via randomly interleaved scattering projection”, Optica 8, 1462-1470 (2021).
- 10. Zhenzhen Li; Xiujuan Zhang; Chengui Xiao; Da Chen; Shushi Huang; Pengfei Zhang*; Guiwen Wang; Combination of multi-focus Raman spectroscopy and compressive sensing for parallel monitoring of single-cell dynamics, Journal of Innovative Optical Health Sciences, 14(6): 2150021 (2021).
- 11. Naqash Ali, Zhixuan Huang, Jing Zong, Yiwen Ma, Yabing Xiao, Lei Wang, Pengfei Zhang*, Da Chen, “Real-time analysis of mineral elements in oat using laser-induced breakdown spectroscopy”, Journal of Food Safety and Food Quality, 72(4), 131-136 (2021).
- 12. Pengfei Zhang*, Guiwen Wang*, Shushi Huang, “Parallel micro-Raman spectroscopy of multiple cells in a single acquisition using hierarchical sparsity”, Analyst, 145, 6032-6037 (2020).
- 13. Da Chen, Tong Wang, Yiwen Ma, Guiwen Wang, Qunwei Kong, Pengfei Zhang*, Ruilong Li*, Rapid characterization of heavy metals in single microplastics by laser induced breakdown spectroscopy, Science of The Total Environment, 743, 140850 (2020).
- 14. Chen, D., Huang, Z., Wang, T., Ma, Y., Zhang, Y., Wang, G., Zhang, P.*, “High-throughput analysis of single particles by micro laser induced breakdown spectroscopy,” Analytica Chimica Acta, 1095, 14-19 (2020).
- 15. Zhang P.*, Wang, G., Zhang, X., Li, Y.-Q*, “Single-acquisition 2-D multifocal Raman spectroscopy using compressive sensing,” Analytical Chemistry, 92 (1), 1326-1332 (2020).
- 16. Zhang P., Huang, Z., Ma, Y., Li, Y., Ali, N., Li, Q., Chen, D., “On-line detection of radioactive and non-radioactive heavy metals in tobacco smoke using portable laser-induced breakdown spectroscopy,” Analyst, 144, 3567-3572 (2019).
- 17. Miao, Z., Zhang P., Zhang Y., Huang X., Liu J., Wang G., “Single-cell analysis reveals the effects of glutaraldehyde and formaldehyde on individual Nosema bombycis spores.”, Analyst, 144 (9), 3136-3143 (2019).
- 18. Zhang, P., Li, L., Lin, L., Shi, J., and Wang, L. V., “In vivo superresolution photoacoustic computed tomography by localization of single dyed droplets,”. Light: Science & Applications, 8(1), 36 (2019).
- 19. Micheva-Viteva, S. N., Ross, B. N., Gao, J., Adikari, S., Zhang, P., Mourant, J. R., & Hong-Geller, E., “Increased mortality in mice following immunoprophylaxis therapy with high dosage of nicotinamide in Burkholderia persistent infections,” Infection and immunity, 87(1), e00592-18 (2019).
- 20. Zhang, P. *, Song, G., and Yu, L., "Optical Trapping of Single Quantum Dots for Cavity Quantum Electrodynamics," Photonics Research, 6(3): 182-185 (2018).
- 21. Rao, L., Feeherry, F., Ghosh, S., Liao, X., Lin, X., Zhang, P., Li, Y., Doona, C., and Setlow, P., "Effects of lowering water activity by various humectants on germination of spores of Bacillus species with different germinants," Food Microbiology, 72, 112-127 (2018).
- 22. Fu, H., Li, S., Wang, Y., Song, G., Zhang, P., Wang, L., Yu, L., "Independently Tunable Ultrasharp Double Fano Resonances in Coupled Plasmonic Resonator System," IEEE Photonics Journal, 10(1), 4800409 (2018).
- 23. Zhang, P., Li, L., Lin, L., Hu, P., Shi, J., He, Y., Zhu, L., Zhou, Y., and Wang, L.V., "High-resolution deep functional imaging of the whole mouse brain by photoacoustic computed tomography in vivo," Journal of Biophotonics, 11(1): e201700024 (2018).
- 24. Lin, L.†, Zhang, P. †, Xu, S., Shi, J., Li, L., Yao, J., Wang, L., and Wang, L.V., "Hand-held optical-resolution photoacoustic microscopy," Journal of Biomedical Optics, 22(4), 041002(2017).
- 25. Zhang, P., Goodwin, P.M., and Werner, J.H., "Light-sheet Microscopy by confocal line scanning of dual-Bessel Beams," Journal of Biomedical Optics, 21 (10), 100502 (2016).
- 26. Tao, Z., Zhang, P., Qin, Z., Li, Y.Q. and Wang, G., "Poly(3-hydroxybutyrate) anabolism in Cupriavidus necator cultivated at various carbon-to-nitrogen ratios: insights from single-cell Raman spectroscopy," Journal of Biomedical Optics, 21(9), 097005-097005 (2016).
- 27. Tao, Z., Peng, L., Zhang, P., Li, Y.Q. and Wang, G., "Probing the Kinetic Anabolism of Poly-Beta-Hydroxybutyrate in Cupriavidus necator H16 Using Single-Cell Raman Spectroscopy," Sensors, 16(8), 1257 (2016).
- 28. Liang, J., Zhang, P., Setlow, P., and Li, Y.-Q., "High-precision fitting measurements of the kinetics of size changes during germination of individual Bacillus spores," Applied and Environmental Microbiology, 80(15), 4606-4615 (2014).
- 29. Zhang, P., Goodwin, P.M., and Werner, J.H., "Fast, super resolution imaging via Bessel-beam stimulated emission depletion microscopy," Optics Express, 22, 12398-12409 (2014).
- 30. Zhang, P., Phipps, M.E., Goodwin, P.M., and Werner, J.H., "Confocal line scanning of a Bessel beam for fast 3D Imaging," Optics Letters, 39(12), 3682-3685 (2014).
- 31. Zhang, P., Goodwin, P.M., and Werner, J.H., “Interferometric three-dimensional single molecule localization microscopy using a single high numerical-aperture objective,” Applied Optics, 53(31), 7415-7421 (2014).
- 32. Zhang, P., Liang, J., Yi, X., Setlow, P., and Li, Y.-Q., "Monitoring of Commitment, Blocking and Continuation of Nutrient Germination of Individual Bacillus subtilis Spores," Journal of Bacteriology, 196(13), 2443-2454 (2014).
- 33. Setlow, B., Parish, S., Zhang, P., Li, Y.-Q., Neely, C., and Setlow, P., "Mechanism of killing of spores of Bacillus anthracis in a high-temperature gas environment, and analysis of DNA damage generated by various decontamination treatments of spores of Bacillus anthracis," Journal of Applied Microbiology, 116, 805-814 (2014).
- 34. Ramirez-Peralta A., Zhang P., Li, Y.-Q., and Setlow, P., "Effects of Sporulation Conditions on the Germination and Germination Protein Levels of Spores of Bacillus subtilis," Applied and Environmental Microbiology, 78, 2689-2697 (2012).
- 35. Li, Y., Davis, A., Korza G., Zhang P., Li, Y.-Q., Setlow, B., Setlow, P., and Hao B., "Role of a SpoVA protein in dipicolinic acid uptake into developing spores of Bacillus subtilis," Journal of Bacteriology, 194(8), 1875-1884 (2012).
- 36. Zhang, P., Kong, L., Wang, G., Scotland, M., Ghosh S., Setlow, B., Setlow, P., and Li, Y.-Q., "Analysis of the slow germination of multiple individual superdormant B. subtilis spores using multifocus Raman microspectroscopy and DIC microscopy," Journal of Applied Microbiology, 112, 526-536 (2012).
- 37. Zhang, P., Thomas, S., Li, Y.-Q., and Setlow, P., "Effects of Cortex Peptidoglycan Structure and Cortex Hydrolysis on the Kinetics of Ca2+-Dipicolinic Acid Release During Bacillus subtilis Spore Germination," Journal of Bacteriology, 194, 646-652 (2012).
- 38. Kong, L., Zhang P., Setlow, P., and Li, Y.-Q., "Multifocus confocal Raman microspectroscopy for rapid single-particle analysis," Journal of Biomedical Optics, 16, 120503 (2011).
- 39. Wang, G., Zhang, P., Paredes-Sabja, D., Green, C., Setlow, P., Sarker, M.R. and Li, Y.-Q., "Analysis of the germination of individual Clostridium perfringens spores and its heterogeneity," Journal of Applied Microbiology, 111, 1212–1223 (2011).
- 40. Sanchez-Salas, J.-L., Setlow, B., Zhang, P., Li, Y.-Q., and Setlow, P., "Maturation of released spores is necessary for acquisition of full spore heat resistance during Bacillus subtilis sporulation," Applied and Environmental Microbiology, 77, 6746-6754 (2011).
- 41. Ghosh, S., Ramirez-Peralta, A., Gaidamakova, E., Zhang, P., Li, Y.-Q., Daly, M.J. and Setlow, P., "Effects of Mn levels on resistance of Bacillus megaterium spores to heat, radiation and hydrogen peroxide," Journal of Applied Microbiology, 111, 663–670 (2011).
- 42. Zhang P., Kong, L., Wang, G., Setlow, P., and Li, Y.-Q., "Monitoring the wet-heat inactivation dynamics of single spores of Bacillus species by using Raman tweezers, differential interference contrast microscopy, and nucleic acid dye fluorescence microscopy," Applied and Environmental Microbiology, 77, 4754-4769 (2011).
- 43. Kong, L., Zhang, P., Yu, J., Setlow, P., and Li, Y.-Q., "Rapid confocal Raman imaging using a synchro multifoci-scan scheme for dynamic monitoring of single living cells," Applied Physics Letters, 98, 213703 (2011).
- 44. Wang, G., Zhang, P., Setlow, P., and Li, Y.-Q., "Kinetics of germination of wet-heat-treated individual spores of Bacillus species, monitored by Raman spectroscopy and differential interference contrast microscopy," Applied and Environmental Microbiology, 77, 3368-3379 (2011).
- 45. Kong L., Zhang P., Wang, G., Yu, J., Setlow, P., and Li, Y.-Q., "Characterization of bacterial spore germination using phase-contrast and fluorescence microscopy, Raman spectroscopy and optical tweezers," Nature Protocols, 6, 625–639 (2011).
- 46. Zhang, P., Kong, L., Setlow, P., and Li, Y.-Q., "Multiple-trap laser tweezers Raman spectroscopy for simultaneous monitoring of the biological dynamics of multiple individual cells," Optics Letters, 35, 3321-3323 (2010).
- 47. Zhang, P., Garner, W., Yi, X., Yu, J., Li, Y.-Q., and Setlow, P., "Factors affecting variability in time between addition of nutrient germinants and rapid dipicolinic acid release during germination of spores of Bacillus species," Journal of Bacteriology, 192, 3608-3619 (2010).
- 48. Zhang, P., Kong, L., Setlow, P., and Li, Y.-Q., "Characterization of wet-heat inactivation of single spores of Bacillus species by dual-trap Raman spectroscopy and elastic light scattering," Applied and Environmental Microbiology, 76, 1796–1805 (2010).
- 49. Zhang, P., Kong, L., Wang, G., Setlow, P., and Li, Y.-Q., "Combination of Raman tweezers and quantitative differential interference contrast microscopy for measurement of dynamics and heterogeneity during the germination of individual bacterial spores," Journal of Biomedical Optics, 15, 056010 (2010).
- 50. Coleman, W.H., Zhang, P., Li, Y.-Q., and Setlow, P., "Mechanism of killing of spores of Bacillus cereus and Bacillus megaterium by wet heat," Letters in Applied Microbiology, 50, 507-514 (2010).
- 51. Kong, L., Zhang, P., Yu, J., Setlow, P., and Li, Y.-Q., "Monitoring the kinetics of uptake of a nucleic acid dye during the germination of single spores of Bacillus species," Analytical Chemistry, 82, 8717–8724 (2010).
- 52. Kong, L., Zhang, P., Setlow, P., and Li, Y.-Q., "Characterization of bacterial spore germination using integrated phase contrast microscopy, Raman spectroscopy, and optical tweezers," Analytical Chemistry, 82, 3840–3847 (2010).
- 53. Zhang, P., Setlow, P., and Li, Y.-Q., "Characterization of single heat-activated Bacillus spores using laser tweezers Raman spectroscopy," Optics Express, 17, 16480-16491 (2009).
- 54. Ghosh, S., Zhang, P., Li, Y.-Q., and Setlow, P., "Superdormant spores of Bacillus species have elevated wet-heat resistance and temperature requirements for heat activation", Journal of Bacteriology, 191, 5584-5591 (2009).
- 55. Zhang, H., Zhang, P., Xu, X. Cheng, F., and Wang, Y., "Optimized temperature measurement with time-of-flight method", Optics Communications, 282, 3278-3281 (2009).
- 56. Zhang, P., Zhang, H., Xu, X., and Wang, Y., "Cooling induced by parametric resonance in a magnetic quadrupole trap", Chinese Optics Letters, 6, 87-89 (2008).
- 57. Zhang, P., Zhang, H., Xu, X., and Wang, Y., "Monte Carlo simulation of cooling induced by parametric resonance," Chinese Physics Letters, 25, 89-92(2008).
- 58. 张鹏飞,许忻平,张海潮,周善钰,王育竹,"紫外光诱导原子脱附技术在单腔磁阱装载中的应用, "物理学报, 56 (6), 3205-3211 (2007).
- 59. Zhang H., Zhang P., Xu X., Han J., and Wang Y., "Trapping of neutral atoms with a radio-frequency field ", Chinese Physics Letters, 22 (1), 83-86(2005).
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